Decomposer
Decomposers are organisms that break down dead organisms and release the nutrients from the dead mulch matter into the environment around them. Decomposition relies on chemical processes similar to digestion in animals; in fact, many sources use the words digestion and decomposition interchangeably.[1] In both processes, complex molecules are chemically broken down by enzymes into simpler, smaller ones. The term "digestion," however, is commonly used to refer to food breakdown that occurs within animal bodies, and results in the absorption of nutrients from the gut into the animal's bloodstream.[2] This is contrasted with external digestion, meaning that, rather than swallowing food and then digesting it using enzymes located within a GI tract, an organism instead releases enzymes directly onto the food source.[3] After allowing the enzymes time to digest the material, the decomposer then absorbs the nutrients from the environment into its cells.[4] Decomposition is often erroneously conflated with this process of external digestion, probably because of the strong association between fungi, which are external digesters, and decomposition.
The term "decomposer" refers to a role in an ecosystem, not to a particular class or type of organism, or even to a specific capacity of those organisms.[5] The definition of "decomposer" therefore centers on the outcome of the decomposition process, rather than the types of organisms performing it. At the center of this definition are the organisms that benefit most directly from the increase in nutrient availability that results from decomposition; plants and other non-mobile (sessile) autotrophs cannot travel to seek out nutrients, and most cannot digest other organisms themselves. They must therefore rely on decomposers to free up nutrients from dead matter that they can then absorb.[6]
Note that this definition does not focus on where digestion takes place (i.e. inside or outside of an organism's body), but rather on where the products of that digestion end up. "Decomposer" as a category, therefore, would include not just fungi and bacteria, which perform external digestion, but also invertebrates such as earthworms, woodlice, and sea cucumbers that digest dead matter internally and release nutrients locally via their feces.[6] In some definitions of decomposition that center on the means and location of digestion, these invertebrates, which digest their food internally, are set apart from decomposers and placed in a separate category called detritivores.[4] These categories are not, in fact, mutually exclusive. "Detritivore" describes behavior and physiology, while "decomposer" describes an ecosystem role. Therefore, an organism can be both a detritivore and a decomposer.
While there are also purely physical processes, like weathering and ultraviolet light, that contribute to decomposition, "decomposer" refers only to living organisms that contribute to the process, whether by physical or chemical breakdown of dead matter.
Terrestrial decomposers
[edit]In terrestrial environments, decomposition happens mainly in or on soil, and decomposers' activities lead to increased soil fertility.[7] The main nutrients plants have to derive from soils are nitrogen, phosphorus, and potassium, and all three have to be available in forms that are accessible to and absorbable by the plants. Decomposition is the process of breaking large molecules in dead matter down into smaller molecules that nearby plants are able to take up through their roots. Some steps of the process occur via mechanical grinding and churning by things like earthworms and plant roots in a process called bioturbation.[8] Further breakdown, beyond those physical means, requires the presence of enzymes. The paired processes are akin to what occurs in mammal digestive tracts: food is mechanically ground up by teeth, and then chemically broken down by enzymes.
A given organism's ability to contribute to decomposition is largely dependent on what enzymes that organism possesses. Enzymes for the digestion of molecules like fats, proteins, and starch are widespread and many organisms, from microbes to mammals, have them.[9] As a result, those molecules are the first to decompose in the environment. Cellulose in dead plants is broken down by cellulase enzymes, which are present in far fewer organisms, and the enzymes needed to digest lignin, a chemically complex molecule in woody trees and shrubs, in fewer still.[10]
Fungi
[edit]The primary decomposer of litter in many ecosystems is fungi.[11][12] Unlike bacteria, which are unicellular organisms and are decomposers as well, most saprotrophic fungi grow as a branching network of hyphae. Bacteria are restricted to growing and feeding on the exposed surfaces of organic matter, but fungi can use their hyphae to penetrate larger pieces of organic matter below the surface. Additionally, only wood-decay fungi have evolved lignin-modifying enzymes necessary to decompose lignin.[13] These two factors make fungi the primary decomposers in forests, where litter has high concentrations of lignin and often occurs in large pieces like fallen trees and branches. Fungi decompose organic matter by releasing enzymes to break down the decaying material, after which they absorb the nutrients in the decaying material.[14] Hyphae are used to break down matter and absorb nutrients and are also used in reproduction.
See also
[edit]References
[edit]- ^ Clark, Mary Ann; Douglas, Matthew; Choi, Jung (2018-03-28). "6.1 Energy and Metabolism - Biology 2e | OpenStax". openstax.org. Retrieved 2024-10-30.
- ^ Patricia, Justin J.; Dhamoon, Amit S. (2024), "Physiology, Digestion", StatPearls, Treasure Island (FL): StatPearls Publishing, PMID 31334962, retrieved 2024-10-30
- ^ "31.2: Fungal Forms, Nutrition, and Reproduction". Biology LibreTexts. 2021-12-05. Retrieved 2024-10-30.
- ^ a b Trophic level. Eds. M. McGinley & C. J. Cleveland. Encyclopedia of Earth. National Council for Science and the Environment. Washington DC
- ^ Clark, Mary Ann; Douglas, Matthew; Choi, Jung (2018-03-28). "46.1 Ecology of Ecosystems - Biology 2e | OpenStax". openstax.org. Retrieved 2024-11-11.
- ^ a b Griffiths, Hannah M.; Ashton, Louise A.; Parr, Catherine L.; Eggleton, Paul (September 2021). "The impact of invertebrate decomposers on plants and soil". New Phytologist. 231 (6): 2142–2149. Bibcode:2021NewPh.231.2142G. doi:10.1111/nph.17553. hdl:10072/406155. ISSN 0028-646X. PMID 34128548.
- ^ "Soil Carbon Storage | Learn Science at Scitable". www.nature.com. Retrieved 2024-11-30.
- ^ Ruiz, Siul; Or, Dani; Schymanski, Stanislaus J. (2015-06-18). "Soil Penetration by Earthworms and Plant Roots—Mechanical Energetics of Bioturbation of Compacted Soils". PLOS ONE. 10 (6): e0128914. Bibcode:2015PLoSO..1028914R. doi:10.1371/journal.pone.0128914. ISSN 1932-6203. PMC 4472233. PMID 26087130.
- ^ Griffiths, Hannah M.; Ashton, Louise A.; Parr, Catherine L.; Eggleton, Paul (2021). "The impact of invertebrate decomposers on plants and soil". New Phytologist. 231 (6): 2142–2149. Bibcode:2021NewPh.231.2142G. doi:10.1111/nph.17553. hdl:10072/406155. ISSN 1469-8137. PMID 34128548.
- ^ Nakazawa, Takehito; Yamaguchi, Iori; Zhang, Yufan; Saka, Chinami; Wu, Hongli; Kayama, Keita; Kawauchi, Moriyuki; Sakamoto, Masahiro; Honda, Yoichi (October 2023). "Experimental evidence that lignin-modifying enzymes are essential for degrading plant cell wall lignin by Pleurotus ostreatus using CRISPR/Cas9". Environmental Microbiology. 25 (10): 1909–1924. Bibcode:2023EnvMi..25.1909N. doi:10.1111/1462-2920.16427. ISSN 1462-2920. PMID 37218079.
- ^ Godbold, Douglas L.; Hoosbeek, Marcel R.; Lukac, Martin; Cotrufo, M. Francesca; Janssens, Ivan A.; Ceulemans, Reinhart; Polle, Andrea; Velthorst, Eef J.; Scarascia-Mugnozza, Giuseppe; De Angelis, Paolo; Miglietta, Franco (2006-03-01). "Mycorrhizal Hyphal Turnover as a Dominant Process for Carbon Input into Soil Organic Matter". Plant and Soil. 281 (1): 15–24. Bibcode:2006PlSoi.281...15G. doi:10.1007/s11104-005-3701-6. ISSN 1573-5036. S2CID 24926892.
- ^ Talbot, J. M.; Allison, S. D.; Treseder, K. K. (2008). "Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change". Functional Ecology. 22 (6): 955–963. Bibcode:2008FuEco..22..955T. doi:10.1111/j.1365-2435.2008.01402.x. ISSN 1365-2435.
- ^ Blanchette, Robert (September 1991). "Delignification by Wood-Decay Fungi". Annual Review of Phytopathology. 29: 281–403. doi:10.1146/annurev.py.29.090191.002121.
- ^ Waggoner, Ben; Speer, Brian. "Fungi: Life History and Ecology". Introduction to the Funge=24 January 2014.
Further reading
[edit]- Bear, MH; Hendrix, PF; Cheng, W (1992). "Microbial and faunal interactions and effects on litter nitrogen and decomposition in agroecosystems". Ecological Monographs. 62 (4): 569–591. Bibcode:1992EcoM...62..569B. doi:10.2307/2937317. JSTOR 2937317. S2CID 86031411.
- Hunt HW, Coleman DC, Ingham ER, Ingham RE, Elliot ET, Moore JC, Rose SL, Reid CPP, Morley CR (1987) "The detrital food web in a shortgrass prairie". Biology and Fertility of Soils 3: 57-68
- Smith TM, Smith RL (2006) Elements of Ecology. Sixth edition. Benjamin Cummings, San Francisco, CA.